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Matthias DöringMax-Planck-Institut für Informatik 66123 Saarbrücken, Germany |
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email: | mdoering@mpi-inf.mpg.de | |
phone: | +49 681 9325 3022 | |
fax: | +49 681 9325 3099 | |
room: | 522 (Building E1 4) |
Publications
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Döring M, Büch J, Friedrich G, Pironti A, Kalaghatgi P, Knops E, Heger E, Obermeier M, Däumer, M, Thielen A, Kaiser R, Lengauer T, Pfeifer N.
geno2pheno[ngs-freq]: a genotypic interpretation system for identifying viral drug resistance using next-generation sequencing data Nucleic Acids Research 2018. doi:10.1093/nar/gky349. -
Döring M, Borrego P, Büch J, Martins A, Friedrich G, Camacho RJ, Eberle J, Kaiser R, Lengauer T, Taveira N, Pfeifer N.
A genotypic method for determining HIV-2 coreceptor usage enables epidemiological studies and clinical decision support Retrovirology 2016, 13:85. - Kartashev V, Döring M, Nieto L, Coletta E, Kaiser R, Sierra S New Findings in HCV Genotype Distribution in selected West European, Russian and Israeli Regions J Clin Virol 2016, 81:82–89.
- Peiffer K-H, Sommer L, Susser S, Vermehren J, Herrmann E, Döring M, Dietz J, Perner D, Berkowski C, Zeuzem S, Sarrazin C Interferon lambda 4 genotypes and resistance-associated variants in patients infected with hepatitis C virus genotypes 1 and 3 Hepatology 2015, 63:63–73.
- Döring M, Gasparoni G, Gries J, Nordström K, Lutsik P, Walter J, Pfeifer N
Identification and analysis of methylation call differences between bisulfite microarray and bisulfite sequencing data with statistical learning techniques
BMC Bioinformatics 2015, 16:A7. - Beggel B, Neumann-Fraune M, Döring M, Lawyer G, Kaiser R, Verheyen J, Lengauer T
Genotyping hepatitis B virus dual infections using population-based sequence data
J Gen Virol 2012, 93:1899–1907.
Theses
- Master's thesis. Supervisor: Dr. Nico Pfeifer. Reviewers: Prof. Dr. Thomas Lengauer, Ph.D. and Dr. Nico Pfeifer.
Identification and Analysis of Methylation Call Differences between Bisulfite Microarray and Bisulfite Sequencing Data with Statistical Learning Techniques
Max Planck Institute for Informatics, Saarbrücken, Germany, June 12, 2014 - Bachelor's thesis. Supervisor: Bastian Beggel. Reviewers: Prof. Dr. Thomas Lengauer, Ph.D. and Dr. Ingolf Sommer.
Web Implementation of the HBV Dual Infection Model
Max Planck Institute for Informatics, Saarbrücken, Germany, September 29, 2011
Talks
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Development of an open-source computational tool for designing, evaluating, and comparing primer sets for multiplex PCRs
Virological Seminar, Robert Koch-Institut, Berlin, Germany, June 18, 2018. -
geno2pheno[ngs-freq]: genotypic resistance testing in the era of next-generation sequecing
Arevir Meeting 2018, Cologne, Germany, May 4-5, 2018. -
geno2pheno[ngs-freq]: bringing next-generation sequencing to the clinic
11th Rettenstein Symposium 2018, Neukirchen, Austria, Jan 31-Feb 1, 2018. -
A genotypic method for the identification of HIV-2 coreceptor usage
Arevir Meeting 2017, Cologne, Germany, May 5-6, 2017. -
Designing novel primers for the amplification of human immunoglobulins
10th Rettenstein Symposium, Neukirchen, Austria, February 19-24, 2017. -
EucoHIV - The European coreceptor HIV-1 cohort study: outcomes of maraviroc use across Europe
Arevir Meeting 2016, Cologne, Germany, April 29-30, 2016. -
Prediction of HIV-2 Coreceptor Usage
9th Rettenstein Symposium, Neukirchen, Austria, January 31-February 3, 2016. -
Databases and Tools for Virologists
ESCV Workshop "Techniques in Clinical Virology", Istanbul, Turkey, December 3-4, 2015. -
European Clinical Data on HIV-1 Coreceptor Usage and Genotypic Identification of Tropism in HIV-2
Arevir Meeting 2015, Cologne, Germany, May 8-9, 2015. -
Insights from the EucoHIV study on Maraviroc
8th Rettenstein Symposium, Neukirchen, Austria, February 2-6, 2015. -
Identification and analysis of methylation call differences between bisulfite microarray and bisulfite sequencing data with statistical learning techniques
Student Council Symposium at the 13th European Conference on Computational Biology, Strasbourg, France, September 6, 2014.
Posters
- Döring M, Büch J, Friedrich G, Pironti A, Kalaghatgi P, Knops E, Heger E, Obermeier M, Däumer, M, Thielen A, Kaiser R, Lengauer T, Pfeifer N. geno2pheno[ngs-freq]: a web service for identifying drug resistance in HIV-1 and HCV next-generation sequencing samples 16th European Meeting on HIV & Hepatitis, Rome, Italy, 29 May -1 June 2018
- Matthias Döring, Christoph Kreer, Nathalie Lehnen, Philipp Schommers, Meryem Seda Ercanoglu, Nico Pfeifer, Florian Klein openPrimeR, a Primer Design Tool for Amplifying B Cell cDNA Encoding Human Antibodies Conference on Retroviruses and Opportunistic Infections 2018, Boston, USA, 4-7 March 2018
- Matthias Döring, Chrstoph Kreer, Nathalie Lehnen, Nico Pfeifer, Florian Klein openPrimeR, a novel primer design tool for amplifying B cell cDNA encoding human antibodies 16th European AIDS Conference, Milan, Italy, 25-27 October 2017
- Matthias Döring, Chrstoph Kreer, Nathalie Lehnen, Nico Pfeifer, Florian Klein A novel primer design approach for the amplification of immunoglobulins encoding broadly neutralizing antibodies against human immunodeficiency virus type 1 ISMB/ECCB 2017, Prague, Czech Republic, 21-25 July 2017
- Matthias Döring, Chrstoph Kreer, Nathalie Lehnen, Nico Pfeifer, Florian Klein A novel primer design approach for the amplification of B-cell cDNA encoding broadly neutralizing antibodies against HIV-1 15th European Meeting on HIV & Hepatitis, Rome, Italy, 7-9 June 2017
- Matthias Döring, Pedro Borrego, Joachim Büch, Andreia Martins, Georg Friedrich, Ricardo Jorge Camacho, Josef Eberle, Rolf Kaiser, Thomas Lengauer, Nuno Taveira, Nico Pfeifer Geno2pheno [coreceptor-hiv2]: a new diagnostic tool for the genotypic determination of HIV-2 coreceptor usage HIV Glasgow Drug Therapy Congress, Glasgow, Scotland, 23-26 October 2016
- M. Döring, C. Kreer, N. Pfeifer, F. Klein Designing multiplex PCR primers targeting cDNA from B-cells expressing HIV-1 broadly neutralizing antibodies 6th Interntational HIPS Symposium, Saarbrücken, Germany, 29 June 2016
- M. Döring, P. Borrego, J. Büch, G. Friedrich, R. J. Camacho, J. Eberle, R. Kaiser, T. Lengauer, N. Taveira, N. Pfeifer. geno2pheno[coreceptor-hiv2]: a computational tool for the prediction of HIV-2 coreceptor usage 14th European Meeting on HIV & Hepatitis, Rome, Italy, 25-27 May 2016
- A.M. Geretti, M. Döring, E. Schülter, C. Boucher, F. Incardona, R. Kaiser, T. Lengauer, A.M. Vandamme, M. Zazzi
Maraviroc Use and Outcomes across Europe - The European Coreceptor (EUCO) HIV Cohort Study
15th European AIDS Conference, Barcelona, Spain, October 21-24, 2015. - Predicting HIV-2 Coreceptor Usage
Machine Learning for Personalized Medicine Summer School 2015, Manchester, UK, September 21-25, 2015. - Matthias Döring, Nuno Taveira, Pedro Borrego, and Nico Pfeifer
Prediction of HIV-2 Coreceptor Usage with Support Vector Machines
23rd Annual International Conference on Intelligent Systems for Molecular Biology/14th European Conference on Computational Biology, Dublin, Ireland, July 10-14, 2015.
Honors and Awards
- Shared first prize for the best HIV-related poster presentation at the 14th European Meeting on HIV & Hepatitis, 25-27 May 2016.
- Travel fellowship for the European Student Council Symposium, September 6, 2014.
Attended Workshops and Conferences
- Workshop on Next Generation Sequencing of Viruses, Institut Pasteur, Paris, France, May 20-21, 2015.