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Michael Scherer

Michael Scherer

Max-Planck-Institut für Informatik
Research Group Computational Biology

Campus E1 4
66123 Saarbrücken, Germany
email:   mscherer@mpi-inf.mpg.de
phone:   0681 3023295
fax:   +49 681 9325 3099
room:   (Building E1 4)


Publications

  1. Michael Scherer, Petr V. Nazarov, Reka Toth, Shashwat Sahay, Tony Kaoma, Valentin Maurer, Nikita Vedeneev, Christoph Plass, Thomas Lengauer, Jörn Walter, Pavlo Lutsik
    Reference-free deconvolution, visualization and interpretation of complex DNA methylation data using DecompPipeline, MeDeCom and FactorViz
    Nature Protocols, 15, 3240-3263, 2020.
    https://doi.org/10.1038/s41596-020-0369-6
  2. Michael Scherer, Almut Nebel, Andre Franke, Jörn Walter, Thomas Lengauer, Christoph Bock, Fabian Müller, and Markus List
    Quantitative comparison of within-sample heterogeneity scores for DNA methylation data
    Nucleic Acids Research, 48(8), e46, 2020.
    https://doi.org/10.1093/nar/gkaa120
  3. Fabian Müller, Michael Scherer, Yassen Assenov, Pavlo Lutsik, Jörn Walter, Thomas Lengauer, and Christoph Bock
    RnBeads 2.0: comprehensive analysis of DNA methylation data
    Genome Biology, 20(55), 2019.
    https://doi.org/10.1186/s13059-019-1664-9
  4. Lisa Handl, Adrin Jalali, Michael Scherer, Ralf Eggeling, and Nico Pfeifer
    Weighted elastic net for unsupervised domain adaptation with application to age prediction from DNA methylation data
    Bioinformatics, 35(14), 2019.
    https://doi.org/10.1093/bioinformatics/btz338
  5. Clémentine Decamps, Florian Privé, ..., Michael Scherer, Michael G. B. Blum, and Magali Richard
    Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software
    BMC Bioinformatics, 16, 2020.
    https://doi.org/10.1186/s12859-019-3307-2